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Antonio Peon

Antonio Peon

Computational Chemist and Chemoinformatician

Talent
BedfordMember since August 26, 2026
MOEAutoDockFragment dockingStructure-based designLigand-based designGROMACSAMBERAmberToolsParmedForce-field parameterisationTrajectory analysisMM-PBSABinding-energy estimationDeepChemRDKitMDAnalysisKNIMEPythonSQLProject planningResource allocationProtein–ligand interactionsMolecular dynamics simulations
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MOEAutoDockFragment dockingStructure-based designLigand-based design

About

Computational chemist with 20 years driving small-molecule drug discovery through molecular modelling and machine learning. Expert in structure- and ligand-based design, protein–ligand interactions, free-energy calculations and ML-enhanced predictive workflows, with hands-on delivery from hit identification to experimental validation. Proven in multidisciplinary, cross-functional teams and in building pipelines for de novo molecular design.

Proficient in Python and leading molecular-modelling platforms. UK-based and seeking a senior computational chemistry role in drug discovery.

Experience

Senior Computational Chemist II - Tozaro - United Kingdom

(2022-01 - 2026-12)

  • Lead computational chemistry on drug discovery projects, driving structure- and ligand-based molecular design and the prioritisation of compounds against project milestones.
  • Built an AI-driven generative pipeline for de novo molecular design (RDKit, DeepChem), producing chemically valid molecules optimised for drug-likeness and synthesisability.
  • Run molecular screening and docking with MOE and AutoDock to generate mechanistic insight into protein–ligand interactions and guide design.
  • Perform molecular dynamics and free-energy / binding-energy estimation with GROMACS, AmberTools and Parmed (MM-PBSA).
  • Develop and implement machine-learning models to predict compound properties; build reproducible analysis workflows in Python, RDKit and KNIME.
  • Lead project planning, resource allocation and workflow optimisation, delivering key milestones on time and within budget.

Computational Chemist - University of Porto - Portugal

(2017-01 - 2021-12)

  • Ran molecular dynamics simulations of bacterial lipid membranes and (cyclo)peptides using all-atom, united-atom and coarse-grained force fields to investigate membrane interactions.
  • Performed force-field parameterisation and optimisation to ensure accurate representation of the membrane systems.
  • Developed Python / MDAnalysis tools for large-scale trajectory analysis.

Chemoinformatics Chemist - Cancer Research Center of Marseille (CRCM) - France

(2015-01 - 2017-12)

  • Applied machine-learning algorithms for data-driven target prediction (target fishing) to support drug-discovery decisions.
  • Developed a Python / RDKit web server integrated with a SQL database for efficient compound and prediction data management.
  • Analysed drug–gene associations (MANOVA) and collaborated with interdisciplinary teams to translate findings into research direction.

Computational & Organic Chemist - University of Santiago de Compostela - Spain

(2006-01 - 2014-12)

  • Designed and synthesised inhibitors targeting Mycobacterium tuberculosis and Helicobacter pylori enzymes.
  • Used docking and fragment docking to explore binding modes and affinity against target proteins, supporting structure-based design.
  • Conducted molecular dynamics simulations (AMBER) to investigate inhibitor–protein dynamics and interactions.

Education

PhD - Organic Chemistry - University of Santiago de Compostela (2013-01)

Degree - Chemistry - University of Santiago de Compostela (2006-01)

Skills

Computational Chemist and Chemoinformatician

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