Siddiqa Rani
Bioinformatics Student
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About
Completed structured training in next-generation sequencing (NGS) data analysis and machine learning applications in bioinformatics. Implemented sequencing data preprocessing, quality control, and transcriptomic interpretation workflows. Explored applications of high-throughput sequencing technologies in health and disease research.
Experience
RNA Sequencing, NGS & Machine Learning Training Intern - SINES–NUST & NextGen Solutions - Online
(2025-08-05 - 2025-10-21)
- Completed structured training in next-generation sequencing (NGS) data analysis and machine learning applications in bioinformatics.
- Implemented sequencing data preprocessing, quality control, and transcriptomic interpretation workflows.
- Explored applications of high-throughput sequencing technologies in health and disease research.
Structural & Functional Bioinformatics Intern - KAIST - Remote
(2024-08-01 - 2024-08-31)
Supervisor: Hamza Arshad Dar (KAIST Researcher)
- Performed protein structure prediction, refinement, and validation analyses.
- Conducted phylogenetic analysis using MEGA and iTOL.
- Validated protein structures using PROCHECK, ERRAT, and ProSA.
- Visualized protein structures using UCSF Chimera.
- Executed functional annotation using PROSITE, DAVID, CDD, and KEGG.
- Independently completed structural and functional analysis of the human FAM26F protein.
Integrative Biology Laboratory (Bioinformatics Databases & Bacterial Genomics Intern) - Atta-ur-Rahman School of Applied Biosciences (ASAB), National University of Sciences and Technology (NUST) - Islamabad, Pakistan
(2023-08-26 - 2023-10-12)
Supervisor: Prof. Amjad Ali (Google Scholar)
- Utilized bioinformatics databases, including ARTMIS, for bacterial genome analysis.
- Acquired practical knowledge of whole genome sequencing (WGS) methodologies.
- Performed genome assembly, annotation, and comparative genomics analyses using standard pipelines.
- Constructed and interpreted phylogenetic trees to investigate evolutionary relationships.
- Completed certified training in bacterial bioinformatics and whole genome sequencing tools and applications.
Education
B.S. - Bioinformatics - Pak-Austria Fachhochschule Institute of Applied Sciences and Technology (2022-09 - 2026-08)
